Variant report

Variant	rs10737547
Chromosome Location	chr1:169476052-169476053
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1018827	0.87[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2213868	0.88[AMR][1000 genomes]
rs2420370	0.87[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2420371	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2420372	0.85[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4264045	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6009	0.87[CEU][hapmap]
rs6427194	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6427195	0.87[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6427196	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6427197	0.87[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6670848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682179	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6687813	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332582	1.00[YRI][hapmap]
rs9332666	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs970740	0.87[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv831871	chr1:169320673-169486680	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10737547	SLC19A2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169472400-169477200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:169473800-169476800	Weak transcription	HepG2	liver
3	chr1:169473800-169477600	Weak transcription	Stomach Mucosa	stomach
4	chr1:169475800-169481600	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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