Variant report

Variant	rs1018827
Chromosome Location	chr1:169514006-169514007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10737547	0.87[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2213868	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2420370	1.00[CEU][hapmap]
rs2420371	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap]
rs2420372	1.00[CEU][hapmap]
rs6009	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap]
rs6025	1.00[CHD][hapmap]
rs6427194	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6427195	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs6427196	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6427197	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6670848	0.81[EUR][1000 genomes]
rs6682179	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6687813	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs9332582	0.86[ASW][hapmap];1.00[YRI][hapmap]
rs970740	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Venous thromboembolism	21980494	GWAS catalog

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169496000-169515200	Strong transcription	Liver	Liver
2	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
3	chr1:169499000-169519000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
5	chr1:169504000-169515000	Strong transcription	HepG2	liver
6	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
8	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr1:169509600-169515600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:169510200-169515800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:169510800-169515600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:169511000-169520000	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr1:169513400-169515200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:169513600-169525800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:169514000-169515000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links