Variant report

Variant	rs6025
Chromosome Location	chr1:169519049-169519050
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1018827	1.00[CHD][hapmap]
rs1894692	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2420371	1.00[CHD][hapmap]
rs2678166	1.00[AMR][1000 genomes]
rs3917408	1.00[CHB][hapmap]
rs3917429	1.00[CHB][hapmap]
rs3917718	1.00[CHB][hapmap]
rs3917812	1.00[CHB][hapmap]
rs5364	1.00[CHB][hapmap]
rs6427195	1.00[CHD][hapmap]
rs6427197	1.00[CHD][hapmap]
rs6687813	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Venous thromboembolism	22672568	GWAS catalog

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169498400-169524000	Weak transcription	Placenta	Placenta
2	chr1:169500200-169526800	Weak transcription	Left Ventricle	heart
3	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
5	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr1:169511000-169520000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:169513600-169525800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:169516000-169531400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:169517200-169519200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:169517200-169519400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:169517200-169530400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:169518000-169531000	Strong transcription	HepG2	liver
13	chr1:169518400-169531000	Strong transcription	Liver	Liver
14	chr1:169518800-169519200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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