Variant report

Variant	rs3917408
Chromosome Location	chr1:169702084-169702085
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16862686	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs3917407	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs3917429	1.00[CHB][hapmap];1.00[TSI][hapmap]
rs3917718	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs3917812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs3917814	1.00[CEU][hapmap]
rs3917869	1.00[MEX][hapmap]
rs5364	1.00[CHB][hapmap];1.00[MEX][hapmap]
rs6025	1.00[CHB][hapmap]
rs6031	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs6124	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs9332485	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs9332605	1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169701800-169702400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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