Variant report

Variant	rs9332485
Chromosome Location	chr1:169555582-169555583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1557573	1.00[EUR][1000 genomes]
rs16862358	1.00[EUR][1000 genomes]
rs16862404	1.00[EUR][1000 genomes]
rs2157583	1.00[EUR][1000 genomes]
rs3917407	1.00[CHD][hapmap];1.00[TSI][hapmap]
rs3917408	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs3917429	1.00[TSI][hapmap]
rs3917814	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs3917832	1.00[EUR][1000 genomes]
rs3917835	1.00[EUR][1000 genomes]
rs3917844	1.00[EUR][1000 genomes]
rs3917855	1.00[EUR][1000 genomes]
rs3917869	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs5364	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs57207056	1.00[EUR][1000 genomes]
rs58131257	1.00[EUR][1000 genomes]
rs60345655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60781559	1.00[EUR][1000 genomes]
rs60864119	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6124	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs724510	1.00[EUR][1000 genomes]
rs73035543	1.00[EUR][1000 genomes]
rs73035547	1.00[EUR][1000 genomes]
rs73035573	1.00[EUR][1000 genomes]
rs73037438	1.00[EUR][1000 genomes]
rs73037444	1.00[EUR][1000 genomes]
rs74124515	1.00[EUR][1000 genomes]
rs74124518	1.00[EUR][1000 genomes]
rs9287094	1.00[EUR][1000 genomes]
rs9332478	1.00[EUR][1000 genomes]
rs9332479	1.00[EUR][1000 genomes]
rs9332480	1.00[EUR][1000 genomes]
rs9332482	1.00[EUR][1000 genomes]
rs9332483	1.00[EUR][1000 genomes]
rs9332486	1.00[EUR][1000 genomes]
rs9332488	1.00[EUR][1000 genomes]
rs9332489	1.00[EUR][1000 genomes]
rs9332490	1.00[EUR][1000 genomes]
rs9332491	1.00[EUR][1000 genomes]
rs9332492	1.00[EUR][1000 genomes]
rs9332493	1.00[EUR][1000 genomes]
rs9332494	1.00[EUR][1000 genomes]
rs9332496	1.00[EUR][1000 genomes]
rs9332498	1.00[EUR][1000 genomes]
rs9332499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332501	1.00[EUR][1000 genomes]
rs9332506	1.00[EUR][1000 genomes]
rs9332508	1.00[EUR][1000 genomes]
rs9332515	1.00[EUR][1000 genomes]
rs9332518	1.00[EUR][1000 genomes]
rs9332524	1.00[EUR][1000 genomes]
rs9332527	1.00[EUR][1000 genomes]
rs9332530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332532	1.00[EUR][1000 genomes]
rs9332539	1.00[EUR][1000 genomes]
rs9332565	1.00[EUR][1000 genomes]
rs9332569	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169553800-169555800	Active TSS	Liver	Liver
2	chr1:169554000-169555600	Bivalent/Poised TSS	Primary B cells from cord blood	blood
3	chr1:169554400-169555600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:169554400-169555800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr1:169554600-169555800	Active TSS	Primary hematopoietic stem cells	blood
6	chr1:169554800-169556000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr1:169554800-169556200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr1:169554800-169556200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr1:169554800-169556400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr1:169555000-169556000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
11	chr1:169555000-169556000	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr1:169555000-169556000	Bivalent/Poised TSS	HepG2	liver
13	chr1:169555000-169556200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr1:169555200-169556200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr1:169555200-169556200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr1:169555400-169555600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
17	chr1:169555400-169555600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr1:169555400-169555600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
19	chr1:169555400-169555600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr1:169555400-169555600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:169555400-169555600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:169555400-169555600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
23	chr1:169555400-169555600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
24	chr1:169555400-169555600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:169555400-169555600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:169555400-169555600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
27	chr1:169555400-169555600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
28	chr1:169555400-169555600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:169555400-169555600	Flanking Active TSS	Brain Substantia Nigra	brain
30	chr1:169555400-169555600	Bivalent Enhancer	Fetal Brain Male	brain
31	chr1:169555400-169555600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr1:169555400-169555600	Flanking Bivalent TSS/Enh	Rectal Mucosa Donor 31	rectum
33	chr1:169555400-169555600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
34	chr1:169555400-169555600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
35	chr1:169555400-169555600	Flanking Bivalent TSS/Enh	A549	lung
36	chr1:169555400-169555600	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
37	chr1:169555400-169555600	Flanking Active TSS	NHEK	skin
38	chr1:169555400-169555800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr1:169555400-169555800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
40	chr1:169555400-169555800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr1:169555400-169555800	Active TSS	H9 Cell Line	embryonic stem cell
42	chr1:169555400-169555800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
43	chr1:169555400-169555800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr1:169555400-169555800	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr1:169555400-169555800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:169555400-169555800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr1:169555400-169555800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
48	chr1:169555400-169555800	Flanking Active TSS	Esophagus	oesophagus
49	chr1:169555400-169555800	Enhancers	Fetal Heart	heart
50	chr1:169555400-169555800	Bivalent/Poised TSS	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links