Variant report

Variant	rs73035543
Chromosome Location	chr1:169534819-169534820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169529558..169531629-chr1:169534485..169537061,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10489184	0.92[AFR][1000 genomes]
rs1557573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16862358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16862404	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2157583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917832	1.00[EUR][1000 genomes]
rs3917835	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917844	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917855	1.00[EUR][1000 genomes]
rs57207056	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57637273	1.00[AMR][1000 genomes]
rs58131257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60345655	1.00[EUR][1000 genomes]
rs60781559	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60864119	1.00[EUR][1000 genomes]
rs724510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73035547	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73035573	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73037438	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73037444	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9287094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332479	1.00[EUR][1000 genomes]
rs9332480	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332482	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332485	1.00[EUR][1000 genomes]
rs9332486	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332488	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332489	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332491	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332492	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332494	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332496	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332498	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332499	1.00[EUR][1000 genomes]
rs9332501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332506	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332515	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332518	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332530	1.00[EUR][1000 genomes]
rs9332532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332539	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332569	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
2	chr1:169524600-169541800	Weak transcription	Placenta	Placenta
3	chr1:169530200-169535400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:169530200-169539000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:169533200-169551600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr1:169533400-169544600	Enhancers	Stomach Mucosa	stomach
7	chr1:169534000-169541400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr1:169534200-169537000	Genic enhancers	HepG2	liver
9	chr1:169534400-169536000	Enhancers	Duodenum Mucosa	Duodenum
10	chr1:169534600-169535800	Enhancers	HUVEC	blood vessel
11	chr1:169534600-169537400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:169534800-169535200	Enhancers	Primary hematopoietic stem cells	blood
13	chr1:169534800-169535400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:169534800-169535400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:169534800-169535600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr1:169534800-169535600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr1:169534800-169535600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:169534800-169535600	Enhancers	Dnd41	blood
19	chr1:169534800-169535800	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr1:169534800-169535800	Enhancers	NHEK	skin
21	chr1:169534800-169538800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links