Variant report

Variant	rs10489184
Chromosome Location	chr1:169549040-169549041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169543905..169545512-chr1:169548629..169550660,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1018828	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569471	1.00[JPT][hapmap]
rs16862374	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862375	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862377	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862380	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16862404	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs17522707	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17587779	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917787	0.81[EUR][1000 genomes]
rs3917788	0.81[EUR][1000 genomes]
rs3917793	0.81[EUR][1000 genomes]
rs3917794	0.81[EUR][1000 genomes]
rs3917810	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs3917818	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs3917827	0.84[EUR][1000 genomes]
rs3917835	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs3917836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3917839	0.98[EUR][1000 genomes]
rs3917840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917844	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs3917848	1.00[JPT][hapmap]
rs3917851	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917853	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917873	0.81[EUR][1000 genomes]
rs6023	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60781559	0.96[AFR][1000 genomes]
rs61280985	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6664922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703487	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703865	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035543	0.92[AFR][1000 genomes]
rs73035547	0.96[AFR][1000 genomes]
rs73035573	0.96[AFR][1000 genomes]
rs73037438	0.96[AFR][1000 genomes]
rs73037471	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7528914	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332476	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332478	0.96[AFR][1000 genomes]
rs9332483	0.96[AFR][1000 genomes]
rs9332488	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9332490	0.96[AFR][1000 genomes]
rs9332493	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs9332498	0.96[AFR][1000 genomes]
rs9332501	0.81[AFR][1000 genomes]
rs9332504	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332506	0.81[AFR][1000 genomes]
rs9332508	0.92[AFR][1000 genomes]
rs9332515	0.96[AFR][1000 genomes]
rs9332517	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332518	0.96[AFR][1000 genomes]
rs9332524	0.96[AFR][1000 genomes]
rs9332527	0.96[AFR][1000 genomes]
rs9332532	0.96[AFR][1000 genomes]
rs9332539	0.96[AFR][1000 genomes]
rs9332562	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169533200-169551600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:169541600-169550400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:169542000-169550400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr1:169542200-169554800	Weak transcription	Placenta	Placenta
5	chr1:169543800-169554200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:169545400-169549800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr1:169547200-169549200	Enhancers	HepG2	liver
8	chr1:169548000-169550200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:169548400-169550200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:169548400-169550800	Genic enhancers	Liver	Liver

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