Variant report

Variant	rs3917794
Chromosome Location	chr1:169567513-169567514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1018828	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10489184	0.81[EUR][1000 genomes]
rs1569471	1.00[JPT][hapmap]
rs16862374	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16862375	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16862377	0.81[EUR][1000 genomes]
rs16862380	0.81[EUR][1000 genomes]
rs17522707	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587779	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3917787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917789	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917793	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917810	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917818	1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917836	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3917839	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917840	1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917851	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3917853	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs3917873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023	1.00[AMR][1000 genomes]
rs6664922	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6703487	0.81[EUR][1000 genomes]
rs6703865	0.81[EUR][1000 genomes]
rs73037471	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528914	1.00[AMR][1000 genomes]
rs9332476	0.81[EUR][1000 genomes]
rs9332504	0.81[EUR][1000 genomes]
rs9332517	1.00[AMR][1000 genomes]
rs9332562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169558800-169570000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:169559200-169570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:169564000-169570200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:169564400-169569800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:169565200-169570400	Weak transcription	GM12878-XiMat	blood
6	chr1:169565400-169581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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