Variant report

Variant	rs9332562
Chromosome Location	chr1:169530308-169530309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169529558..169531629-chr1:169534485..169537061,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1018828	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489184	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862374	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862375	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862377	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862380	0.92[EUR][1000 genomes]
rs17522707	1.00[AMR][1000 genomes]
rs17587779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027885	1.00[AFR][1000 genomes]
rs3917787	1.00[AMR][1000 genomes]
rs3917788	1.00[AMR][1000 genomes]
rs3917789	1.00[AMR][1000 genomes]
rs3917793	0.87[AMR][1000 genomes]
rs3917794	1.00[AMR][1000 genomes]
rs3917810	1.00[AMR][1000 genomes]
rs3917818	1.00[AMR][1000 genomes]
rs3917827	1.00[AMR][1000 genomes]
rs3917836	0.90[EUR][1000 genomes]
rs3917839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3917840	0.92[EUR][1000 genomes]
rs3917851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917853	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917873	1.00[AMR][1000 genomes]
rs6023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61280985	0.92[EUR][1000 genomes]
rs6664922	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703487	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703865	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73037471	0.92[EUR][1000 genomes]
rs7528914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332476	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332504	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169505800-169534800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
3	chr1:169507000-169530800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:169516000-169531400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:169517200-169530400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:169518000-169531000	Strong transcription	HepG2	liver
7	chr1:169518400-169531000	Strong transcription	Liver	Liver
8	chr1:169523000-169530800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr1:169524600-169541800	Weak transcription	Placenta	Placenta
10	chr1:169526600-169532200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:169528600-169533400	Weak transcription	Stomach Mucosa	stomach
12	chr1:169530200-169535400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:169530200-169539000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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