Variant report

Variant	rs3917827
Chromosome Location	chr1:169564391-169564392
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169562439..169565344-chr1:169568413..169571209,3	K562	blood:
2	chr1:169564132..169566509-chr1:169578988..169581892,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1018828	0.84[EUR][1000 genomes]
rs10489184	0.84[EUR][1000 genomes]
rs16862374	0.84[EUR][1000 genomes]
rs16862375	0.84[EUR][1000 genomes]
rs16862377	0.84[EUR][1000 genomes]
rs16862380	0.84[EUR][1000 genomes]
rs17522707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17587779	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3917787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917789	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917793	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917836	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917839	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917840	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917851	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3917853	0.84[EUR][1000 genomes]
rs3917873	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023	1.00[AMR][1000 genomes]
rs6664922	0.84[EUR][1000 genomes]
rs6703487	0.84[EUR][1000 genomes]
rs6703865	0.84[EUR][1000 genomes]
rs73037471	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7528914	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9332476	0.84[EUR][1000 genomes]
rs9332504	0.84[EUR][1000 genomes]
rs9332517	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9332562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169558800-169570000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:169559200-169570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:169561600-169565000	Weak transcription	Liver	Liver
4	chr1:169563400-169564400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:169564000-169570200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:169564200-169565200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:169564200-169565200	Enhancers	GM12878-XiMat	blood

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