Variant report

Variant	rs6703865
Chromosome Location	chr1:169550963-169550964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1018828	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489184	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569471	1.00[JPT][hapmap]
rs16862374	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862375	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17522707	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs17587779	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917787	0.81[EUR][1000 genomes]
rs3917788	0.81[EUR][1000 genomes]
rs3917793	0.81[EUR][1000 genomes]
rs3917794	0.81[EUR][1000 genomes]
rs3917810	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs3917818	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs3917827	0.84[EUR][1000 genomes]
rs3917832	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs3917836	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3917839	0.98[EUR][1000 genomes]
rs3917840	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917848	0.87[YRI][hapmap]
rs3917851	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917853	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3917855	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs3917873	0.81[EUR][1000 genomes]
rs57207056	0.97[AFR][1000 genomes]
rs6023	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61280985	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6664922	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6703487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73037471	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7528914	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332479	0.85[AFR][1000 genomes]
rs9332480	0.94[YRI][hapmap];0.97[AFR][1000 genomes]
rs9332482	0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs9332486	0.97[AFR][1000 genomes]
rs9332489	0.97[AFR][1000 genomes]
rs9332491	0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs9332492	0.94[YRI][hapmap];0.97[AFR][1000 genomes]
rs9332494	0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs9332496	0.95[YRI][hapmap];0.97[AFR][1000 genomes]
rs9332504	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332517	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9332562	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Hippocampal atrophy	22745009	GWAS catalog

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169533200-169551600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:169542200-169554800	Weak transcription	Placenta	Placenta
3	chr1:169543800-169554200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:169549200-169551200	Genic enhancers	HepG2	liver
5	chr1:169549800-169551200	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:169550400-169552200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr1:169550600-169552200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr1:169550800-169551000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr1:169550800-169551000	Enhancers	Liver	Liver
10	chr1:169550800-169552400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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