Variant report

Variant	rs57207056
Chromosome Location	chr1:169550763-169550764
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1018828	0.92[AFR][1000 genomes]
rs1557573	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16862358	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16862404	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2157583	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917832	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3917835	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917836	0.92[AFR][1000 genomes]
rs3917840	0.92[AFR][1000 genomes]
rs3917844	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3917853	0.92[AFR][1000 genomes]
rs3917855	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57637273	0.85[AMR][1000 genomes]
rs58131257	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60345655	1.00[EUR][1000 genomes]
rs60781559	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60864119	1.00[EUR][1000 genomes]
rs6664922	0.95[AFR][1000 genomes]
rs6703487	0.97[AFR][1000 genomes]
rs6703865	0.97[AFR][1000 genomes]
rs724510	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73035543	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73035547	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73035573	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73037438	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73037444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73037471	0.92[AFR][1000 genomes]
rs74124515	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74124518	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9287094	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332476	0.97[AFR][1000 genomes]
rs9332478	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332479	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332483	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332485	1.00[EUR][1000 genomes]
rs9332486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332488	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332490	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332493	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332498	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332499	1.00[EUR][1000 genomes]
rs9332501	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332504	0.80[AFR][1000 genomes]
rs9332506	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332508	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332515	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332518	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332524	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332527	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332530	1.00[EUR][1000 genomes]
rs9332532	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332539	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332565	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332569	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169533200-169551600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:169542200-169554800	Weak transcription	Placenta	Placenta
3	chr1:169543800-169554200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr1:169548400-169550800	Genic enhancers	Liver	Liver
5	chr1:169549200-169551200	Genic enhancers	HepG2	liver
6	chr1:169549800-169551200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr1:169550200-169550800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:169550400-169550800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:169550400-169552200	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr1:169550600-169552200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links