Variant report

Variant	rs9332530
Chromosome Location	chr1:169540934-169540935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:169539510..169541317-chr1:169543367..169545442,2	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1557573	1.00[EUR][1000 genomes]
rs16862358	1.00[EUR][1000 genomes]
rs16862404	1.00[EUR][1000 genomes]
rs2157583	1.00[EUR][1000 genomes]
rs3917832	1.00[EUR][1000 genomes]
rs3917835	1.00[EUR][1000 genomes]
rs3917844	1.00[EUR][1000 genomes]
rs3917855	1.00[EUR][1000 genomes]
rs57207056	1.00[EUR][1000 genomes]
rs58131257	1.00[EUR][1000 genomes]
rs60345655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60781559	1.00[EUR][1000 genomes]
rs60864119	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs724510	1.00[EUR][1000 genomes]
rs73035543	1.00[EUR][1000 genomes]
rs73035547	1.00[EUR][1000 genomes]
rs73035573	1.00[EUR][1000 genomes]
rs73037438	1.00[EUR][1000 genomes]
rs73037444	1.00[EUR][1000 genomes]
rs74124515	1.00[EUR][1000 genomes]
rs74124518	1.00[EUR][1000 genomes]
rs9287094	1.00[EUR][1000 genomes]
rs9332478	1.00[EUR][1000 genomes]
rs9332479	1.00[EUR][1000 genomes]
rs9332480	1.00[EUR][1000 genomes]
rs9332482	1.00[EUR][1000 genomes]
rs9332483	1.00[EUR][1000 genomes]
rs9332485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332486	1.00[EUR][1000 genomes]
rs9332488	1.00[EUR][1000 genomes]
rs9332489	1.00[EUR][1000 genomes]
rs9332490	1.00[EUR][1000 genomes]
rs9332491	1.00[EUR][1000 genomes]
rs9332492	1.00[EUR][1000 genomes]
rs9332493	1.00[EUR][1000 genomes]
rs9332494	1.00[EUR][1000 genomes]
rs9332496	1.00[EUR][1000 genomes]
rs9332498	1.00[EUR][1000 genomes]
rs9332499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9332501	1.00[EUR][1000 genomes]
rs9332506	1.00[EUR][1000 genomes]
rs9332508	1.00[EUR][1000 genomes]
rs9332515	1.00[EUR][1000 genomes]
rs9332518	1.00[EUR][1000 genomes]
rs9332524	1.00[EUR][1000 genomes]
rs9332527	1.00[EUR][1000 genomes]
rs9332532	1.00[EUR][1000 genomes]
rs9332539	1.00[EUR][1000 genomes]
rs9332565	1.00[EUR][1000 genomes]
rs9332569	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv872536	chr1:169538466-169547610	Active TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv872537	chr1:169538603-169547610	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169506200-169542800	Weak transcription	Right Ventricle	heart
2	chr1:169524600-169541800	Weak transcription	Placenta	Placenta
3	chr1:169533200-169551600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr1:169533400-169544600	Enhancers	Stomach Mucosa	stomach
5	chr1:169534000-169541400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr1:169535800-169541600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:169536400-169543600	Weak transcription	Left Ventricle	heart
8	chr1:169539000-169541600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:169539400-169542000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr1:169539800-169543800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:169540200-169542000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:169540200-169542200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:169540200-169547200	Genic enhancers	HepG2	liver
14	chr1:169540400-169542000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr1:169540400-169542200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:169540600-169541000	Genic enhancers	Liver	Liver
17	chr1:169540600-169542000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:169540800-169541000	Enhancers	Fetal Intestine Small	intestine
19	chr1:169540800-169541000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr1:169540800-169542000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr1:169540800-169542000	Enhancers	Fetal Intestine Large	intestine
22	chr1:169540800-169542000	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr1:169540800-169543000	Enhancers	Placenta Amnion	Placenta Amnion

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