Variant report

Variant	rs9341427
Chromosome Location	chr6:74311780-74311781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:74221323..74236726-chr6:74306065..74338770,101	K562	blood:
2	chr6:74310744..74313637-chr6:74316920..74318819,2	MCF-7	breast:
3	chr6:74221668..74234853-chr6:74311080..74327130,62	K562	blood:

Variant related genes	Relation type
ENSG00000156508	Chromatin interaction
ENSG00000229862	Chromatin interaction
ENSG00000223967	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10455093	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10455094	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10455095	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10455279	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10455280	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10943107	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10943108	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10943109	0.82[AMR][1000 genomes]
rs10943111	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10943114	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10943115	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10943118	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10943119	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11750970	0.85[AMR][1000 genomes]
rs11751984	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11758258	0.87[AMR][1000 genomes]
rs11969324	0.83[AMR][1000 genomes]
rs12154139	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12189643	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12189647	0.87[AMR][1000 genomes]
rs12190442	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12190753	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12191213	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12192476	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12199348	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12199822	0.90[AMR][1000 genomes]
rs12199937	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12201702	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12201746	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12202024	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12206001	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12207204	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12207961	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12210690	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12212339	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12212738	0.83[ASN][1000 genomes]
rs12214293	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12214539	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17758926	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3734517	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3757112	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3799289	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3799290	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3799293	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3799295	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3823122	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3928609	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706544	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706545	0.85[AMR][1000 genomes]
rs4706546	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706547	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706548	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706549	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706550	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4708068	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4708070	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55698483	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56004619	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs56390246	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62438423	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs62438424	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62438426	0.85[AMR][1000 genomes]
rs62438431	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62440461	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62440465	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62440489	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72947490	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9352013	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
3	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
6	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
7	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
8	nsv527357	chr6:74253266-74325403	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv603694	chr6:74275405-74365807	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv1029927	chr6:74300496-74424355	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv1027691	chr6:74302980-74417450	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
12	nsv886160	chr6:74305276-74341589	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74289600-74323800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:74290600-74318400	Weak transcription	Small Intestine	intestine
3	chr6:74290600-74338800	Weak transcription	Ovary	ovary
4	chr6:74291000-74315800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:74291000-74323600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:74295200-74321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:74296000-74317200	Weak transcription	Fetal Brain Female	brain
8	chr6:74296200-74317800	Weak transcription	Colonic Mucosa	Colon
9	chr6:74296200-74317800	Weak transcription	Gastric	stomach
10	chr6:74296200-74322200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:74296200-74322400	Weak transcription	Brain Germinal Matrix	brain
12	chr6:74296200-74332000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:74296400-74316000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:74296400-74316400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:74296400-74318400	Weak transcription	Aorta	Aorta
16	chr6:74296400-74318400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr6:74296400-74325800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:74296400-74354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:74296400-74354800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:74296400-74355000	Weak transcription	Fetal Brain Male	brain
21	chr6:74296600-74317600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:74296600-74317800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:74296600-74319200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:74296600-74324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:74296600-74324200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:74296600-74324400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr6:74296600-74344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:74296800-74316200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:74296800-74334000	Weak transcription	Fetal Lung	lung
30	chr6:74297000-74313200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:74297000-74313400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:74297000-74313800	Weak transcription	Fetal Thymus	thymus
33	chr6:74297000-74316000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr6:74297000-74318000	Weak transcription	HSMM	muscle
35	chr6:74297000-74361800	Weak transcription	GM12878-XiMat	blood
36	chr6:74297400-74318000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr6:74298400-74316400	Weak transcription	Dnd41	blood
38	chr6:74298400-74321800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:74300600-74313800	Weak transcription	Placenta	Placenta
40	chr6:74300800-74323600	Weak transcription	Esophagus	oesophagus
41	chr6:74303000-74313800	Weak transcription	NHDF-Ad	bronchial
42	chr6:74303000-74318400	Weak transcription	Spleen	Spleen
43	chr6:74303400-74355000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:74304400-74316800	Weak transcription	HepG2	liver
45	chr6:74304600-74312800	Weak transcription	Left Ventricle	heart
46	chr6:74304600-74313000	Weak transcription	Primary B cells from cord blood	blood
47	chr6:74304600-74313200	Weak transcription	Fetal Muscle Leg	muscle
48	chr6:74304600-74316200	Weak transcription	NHLF	lung
49	chr6:74304600-74317800	Weak transcription	Right Ventricle	heart
50	chr6:74305000-74316200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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