Variant report

Variant	rs9341608
Chromosome Location	chr6:77563066-77563067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1011537	1.00[ASN][1000 genomes]
rs1335428	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381670	0.95[ASN][1000 genomes]
rs1381671	0.95[ASN][1000 genomes]
rs1381673	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1463536	0.95[ASN][1000 genomes]
rs16888079	0.95[ASN][1000 genomes]
rs1824642	1.00[ASN][1000 genomes]
rs4557481	0.81[ASN][1000 genomes]
rs4706634	0.95[ASN][1000 genomes]
rs4706635	1.00[ASN][1000 genomes]
rs58519993	0.80[ASN][1000 genomes]
rs6907328	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6908609	0.95[ASN][1000 genomes]
rs6921448	1.00[ASN][1000 genomes]
rs7751987	0.95[ASN][1000 genomes]
rs7769300	0.95[ASN][1000 genomes]
rs9294028	0.95[ASN][1000 genomes]
rs936499	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77561200-77563600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:77561400-77563600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:77561600-77564200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:77562200-77563400	Enhancers	Fetal Intestine Large	intestine
5	chr6:77562200-77563600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:77562200-77563800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr6:77562400-77563600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:77562600-77563400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:77562800-77565200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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