Variant report

Variant	rs16888079
Chromosome Location	chr6:77525160-77525161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1011537	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10498911	1.00[EUR][1000 genomes]
rs1335428	0.95[ASN][1000 genomes]
rs1381670	1.00[ASN][1000 genomes]
rs1381671	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1381673	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1457944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1457945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1463536	1.00[ASN][1000 genomes]
rs16888187	1.00[EUR][1000 genomes]
rs16888196	1.00[EUR][1000 genomes]
rs1824642	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4706634	1.00[ASN][1000 genomes]
rs4706635	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57550972	0.89[AMR][1000 genomes]
rs58080163	1.00[EUR][1000 genomes]
rs58519993	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs59096891	1.00[EUR][1000 genomes]
rs59342998	1.00[EUR][1000 genomes]
rs59710034	1.00[EUR][1000 genomes]
rs61006306	1.00[EUR][1000 genomes]
rs6907328	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6908609	1.00[ASN][1000 genomes]
rs6921448	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73759172	1.00[EUR][1000 genomes]
rs73759173	1.00[EUR][1000 genomes]
rs73759174	1.00[EUR][1000 genomes]
rs73759175	1.00[EUR][1000 genomes]
rs7751987	1.00[ASN][1000 genomes]
rs7769300	1.00[ASN][1000 genomes]
rs9294028	1.00[ASN][1000 genomes]
rs9341608	0.95[ASN][1000 genomes]
rs936499	1.00[ASN][1000 genomes]
rs9447787	1.00[EUR][1000 genomes]
rs9447789	1.00[EUR][1000 genomes]
rs9447839	1.00[EUR][1000 genomes]
rs9986557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77499600-77530800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:77520400-77527200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:77524000-77525200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:77524200-77525200	Enhancers	Adipose Nuclei	Adipose
5	chr6:77524400-77525600	Enhancers	Liver	Liver
6	chr6:77524800-77525200	Enhancers	Skeletal Muscle Female	skeletal muscle

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