Variant report

Variant	rs9447839
Chromosome Location	chr6:77579255-77579256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-10	chr6:77575439-77584888	NONHSAT113649

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10214820	0.94[AFR][1000 genomes]
rs10214846	0.95[AFR][1000 genomes]
rs10498911	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498913	1.00[EUR][1000 genomes]
rs1457944	1.00[EUR][1000 genomes]
rs1457945	1.00[EUR][1000 genomes]
rs1582076	0.96[AFR][1000 genomes]
rs1582077	0.96[AFR][1000 genomes]
rs16888079	1.00[EUR][1000 genomes]
rs16888187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888196	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16888384	1.00[EUR][1000 genomes]
rs16888388	1.00[EUR][1000 genomes]
rs16888423	1.00[EUR][1000 genomes]
rs2105052	0.93[AFR][1000 genomes]
rs3938656	0.91[AFR][1000 genomes]
rs4279388	0.89[AFR][1000 genomes]
rs4318832	0.89[AFR][1000 genomes]
rs4318833	0.89[AFR][1000 genomes]
rs4557476	0.89[AFR][1000 genomes]
rs58080163	1.00[EUR][1000 genomes]
rs59096891	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59342998	1.00[EUR][1000 genomes]
rs59710034	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60025008	1.00[EUR][1000 genomes]
rs61006306	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61022698	1.00[EUR][1000 genomes]
rs61407831	1.00[EUR][1000 genomes]
rs6906837	0.91[AFR][1000 genomes]
rs6913759	0.91[AFR][1000 genomes]
rs6915450	0.97[AFR][1000 genomes]
rs6929543	0.91[AFR][1000 genomes]
rs6933472	0.90[AFR][1000 genomes]
rs6938725	0.89[AFR][1000 genomes]
rs6938815	0.91[AFR][1000 genomes]
rs6939746	0.93[AFR][1000 genomes]
rs6940241	0.93[AFR][1000 genomes]
rs6940780	0.93[AFR][1000 genomes]
rs73759172	1.00[EUR][1000 genomes]
rs73759173	1.00[EUR][1000 genomes]
rs73759174	1.00[EUR][1000 genomes]
rs73759175	1.00[EUR][1000 genomes]
rs9294034	0.97[AFR][1000 genomes]
rs9294035	0.97[AFR][1000 genomes]
rs9294036	0.93[AFR][1000 genomes]
rs9294037	0.91[AFR][1000 genomes]
rs9294038	0.91[AFR][1000 genomes]
rs9294039	0.91[AFR][1000 genomes]
rs9443298	0.96[AFR][1000 genomes]
rs9443299	0.96[AFR][1000 genomes]
rs9443300	0.97[AFR][1000 genomes]
rs9443301	0.97[AFR][1000 genomes]
rs9443302	0.97[AFR][1000 genomes]
rs9443303	0.97[AFR][1000 genomes]
rs9443304	0.92[AFR][1000 genomes]
rs9443305	0.93[AFR][1000 genomes]
rs9447787	1.00[EUR][1000 genomes]
rs9447789	1.00[EUR][1000 genomes]
rs9447841	0.97[AFR][1000 genomes]
rs9447842	0.97[AFR][1000 genomes]
rs9447843	0.97[AFR][1000 genomes]
rs9447844	0.81[AFR][1000 genomes]
rs9447857	0.93[AFR][1000 genomes]
rs9447859	0.92[AFR][1000 genomes]
rs9447860	0.93[AFR][1000 genomes]
rs9447861	0.93[AFR][1000 genomes]
rs9447862	0.93[AFR][1000 genomes]
rs9447864	0.91[AFR][1000 genomes]
rs9447867	0.91[AFR][1000 genomes]
rs9447868	0.90[AFR][1000 genomes]
rs9447869	0.91[AFR][1000 genomes]
rs9447870	0.91[AFR][1000 genomes]
rs9447872	0.91[AFR][1000 genomes]
rs9447873	0.91[AFR][1000 genomes]
rs9447875	0.86[AFR][1000 genomes]
rs9447876	0.91[AFR][1000 genomes]
rs9986557	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3387181	chr6:77571282-77594741	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv886222	chr6:77577055-77734250	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77578400-77585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links