Variant report

Variant	rs9447842
Chromosome Location	chr6:77585310-77585311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:
2	chr6:77392645..77395103-chr6:77585280..77587587,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10214820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214846	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1582076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1582077	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2105052	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs3938656	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4279388	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4318832	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4318833	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4557476	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6906837	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6913759	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6915450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929543	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6933472	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6938725	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6938815	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6939746	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6940241	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6940780	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294036	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294037	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294038	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294039	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443298	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443299	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443300	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9443301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443304	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443305	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447839	0.97[AFR][1000 genomes]
rs9447841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447844	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447857	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447859	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447860	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447861	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447862	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447864	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447867	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447868	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447869	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447870	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447872	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447873	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447875	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447876	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3387181	chr6:77571282-77594741	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv886222	chr6:77577055-77734250	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77584000-77585400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:77585000-77585400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr6:77585000-77585400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:77585000-77585400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
5	chr6:77585000-77585400	Enhancers	Pancreas	Pancrea
6	chr6:77585000-77585600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr6:77585000-77585600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:77585200-77585400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
9	chr6:77585200-77585600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:77585200-77585600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr6:77585200-77585600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
12	chr6:77585200-77585600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr6:77585200-77585600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell

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