Variant report

Variant	rs6938725
Chromosome Location	chr6:77593385-77593386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:77586174..77588444-chr6:77591839..77593898,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10214820	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10214846	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1582076	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1582077	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2105052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3938656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4279388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4318832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4318833	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4557476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6906837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6913759	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6915450	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6929543	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933472	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6938815	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6939746	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940241	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6940780	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294034	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294035	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294036	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294038	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443298	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443299	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443300	0.92[AFR][1000 genomes]
rs9443301	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443302	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443303	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443305	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447839	0.89[AFR][1000 genomes]
rs9447841	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447842	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447843	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447845	0.90[AMR][1000 genomes]
rs9447857	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447859	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447860	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447861	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447862	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447868	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447869	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447872	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447873	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447875	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3387181	chr6:77571282-77594741	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv886222	chr6:77577055-77734250	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv603806	chr6:77587889-77787815	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1021812	chr6:77589219-77792085	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77591200-77595200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:77591400-77596600	Weak transcription	Pancreas	Pancrea

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