Variant report

Variant	rs9294035
Chromosome Location	chr6:77584311-77584312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:77584071..77587000-chr6:77595332..77597359,2	MCF-7	breast:
2	chr6:77582858..77584967-chr6:77718871..77720639,2	MCF-7	breast:
3	chr6:77575911..77578769-chr6:77582342..77584830,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-10	chr6:77575439-77584888	NONHSAT113649

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10214820	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10214846	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1582076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1582077	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2105052	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs3938656	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4279388	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4318832	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4318833	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4557476	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6906837	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6913759	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6915450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6929543	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6933472	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6938725	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6938815	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6939746	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6940241	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6940780	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9294036	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294037	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294038	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9294039	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443298	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443299	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443300	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9443301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9443304	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9443305	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447839	0.97[AFR][1000 genomes]
rs9447841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9447844	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447857	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447859	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447860	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447861	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447862	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447864	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447867	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447868	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447869	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447870	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447872	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447873	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447875	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9447876	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3387181	chr6:77571282-77594741	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv886222	chr6:77577055-77734250	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77578400-77585000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:77584000-77585400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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