Variant report

Variant	rs9341886
Chromosome Location	chr6:82112460-82112461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1343251	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905184	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72907019	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7771802	1.00[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs9344159	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv886328	chr6:82036764-82120647	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv34899	chr6:82090758-82161121	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2757183	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv2759450	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9341886	CUL3	trans	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82111400-82112600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:82111400-82112600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:82111400-82112600	Enhancers	Fetal Heart	heart
4	chr6:82111400-82112600	Enhancers	HSMM	muscle
5	chr6:82111400-82112800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr6:82111400-82112800	Enhancers	NH-A	brain
7	chr6:82111600-82112600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:82111600-82112600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:82111600-82112600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:82111600-82112600	Enhancers	Osteobl	bone
11	chr6:82112000-82112800	Enhancers	HSMMtube	muscle
12	chr6:82112000-82115800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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