Variant report

Variant	rs9342979
Chromosome Location	chr6:73575709-73575710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12197861	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12211380	1.00[CHB][hapmap]
rs1316976	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs2096182	1.00[CHB][hapmap]
rs2211390	1.00[CHB][hapmap]
rs2226137	0.84[CHB][hapmap]
rs4706515	1.00[CHB][hapmap]
rs6909572	0.84[CHB][hapmap]
rs6929347	0.83[CHB][hapmap]
rs7744813	0.84[CHB][hapmap]
rs7755521	0.92[CHB][hapmap]
rs7758801	0.92[CHB][hapmap]
rs7764400	0.81[EUR][1000 genomes]
rs7770776	0.92[CHB][hapmap]
rs7770802	0.92[CHB][hapmap]
rs7775087	0.92[CHB][hapmap]
rs9293917	0.92[CHB][hapmap]
rs9342984	0.92[CHB][hapmap]
rs9351948	0.96[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs9351953	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73570400-73576600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr6:73571000-73576200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73572000-73590200	Weak transcription	GM12878-XiMat	blood
4	chr6:73572200-73576400	Enhancers	HSMM	muscle
5	chr6:73572400-73576000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:73572600-73583800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:73573800-73576000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:73574000-73576000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:73574200-73576000	Weak transcription	Psoas Muscle	Psoas
10	chr6:73574600-73576000	Enhancers	HMEC	breast
11	chr6:73574800-73575800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:73574800-73575800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:73574800-73575800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:73574800-73576000	Enhancers	NHEK	skin
15	chr6:73575000-73576000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr6:73575000-73576200	Weak transcription	Aorta	Aorta
17	chr6:73575200-73575800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:73575200-73575800	Enhancers	NHDF-Ad	bronchial
19	chr6:73575200-73576000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:73575400-73575800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:73575400-73576000	Enhancers	Osteobl	bone

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