Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12211380	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs2096182	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs2211390	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2226137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3920868	0.94[JPT][hapmap]
rs4374796	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4706515	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs6453610	0.90[ASN][1000 genomes]
rs6909572	0.84[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap]
rs6929347	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755521	0.92[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7758801	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7770776	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7770802	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs7775087	0.92[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.84[TSI][hapmap];0.84[ASN][1000 genomes]
rs9293917	0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9342979	0.84[CHB][hapmap]
rs9342984	0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs9351953	0.92[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs951762	0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Refractive error	23396134	GWAS catalog

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73630000-73648400	Weak transcription	Aorta	Aorta
4	chr6:73641800-73646000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:73642200-73647000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:73642200-73651400	Weak transcription	Fetal Brain Male	brain
7	chr6:73642400-73643800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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