Variant report

Variant	rs951762
Chromosome Location	chr6:73626639-73626640
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2226137	0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3920868	0.80[AFR][1000 genomes]
rs4374796	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6453610	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6903864	0.81[AFR][1000 genomes]
rs6909572	0.81[AFR][1000 genomes]
rs6929347	0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7744813	0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7755521	0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7770776	0.80[AFR][1000 genomes]
rs7770802	0.81[YRI][hapmap];0.80[AFR][1000 genomes]
rs7775087	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9293917	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9351953	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73626800	Enhancers	Fetal Heart	heart
3	chr6:73624600-73637200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:73624600-73641400	Weak transcription	Psoas Muscle	Psoas
5	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73625800-73626800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73626000-73626800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:73626400-73626800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:73626600-73627000	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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