Variant report

Variant	rs9343085
Chromosome Location	chr6:74566873-74566874
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16884139	1.00[CEU][hapmap]
rs2882695	0.84[ASN][1000 genomes]
rs2917867	0.84[ASN][1000 genomes]
rs3005490	0.81[ASN][1000 genomes]
rs3005493	0.84[ASN][1000 genomes]
rs3005499	0.83[ASN][1000 genomes]
rs3005500	0.82[ASN][1000 genomes]
rs3012549	0.85[ASN][1000 genomes]
rs3012551	0.84[ASN][1000 genomes]
rs3012552	0.84[ASN][1000 genomes]
rs3012553	0.84[ASN][1000 genomes]
rs3012555	0.84[ASN][1000 genomes]
rs3012556	0.84[ASN][1000 genomes]
rs3012558	0.84[ASN][1000 genomes]
rs3012559	0.83[ASN][1000 genomes]
rs3012564	0.84[ASN][1000 genomes]
rs3012565	0.82[ASN][1000 genomes]
rs6907830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes]
rs9343081	1.00[AFR][1000 genomes]
rs9343083	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9352034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs959369	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526236	chr6:74563545-74662900	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv14513	chr6:74564769-74614549	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74534400-74580600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:74552800-74567600	Weak transcription	NHDF-Ad	bronchial
3	chr6:74555400-74574400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:74555600-74569600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:74556000-74576000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:74556800-74574400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:74562000-74577800	Weak transcription	Aorta	Aorta
8	chr6:74564800-74574800	Weak transcription	HUVEC	blood vessel
9	chr6:74565200-74567800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:74565400-74575800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:74565600-74580400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:74565800-74567000	Weak transcription	HSMMtube	muscle
13	chr6:74565800-74571800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:74565800-74582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:74566600-74567200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:74566800-74567200	Enhancers	Fetal Muscle Leg	muscle
17	chr6:74566800-74567600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:74566800-74567600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:74566800-74567800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:74566800-74569200	Strong transcription	HMEC	breast
21	chr6:74566800-74569800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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