Variant report

Variant	rs959369
Chromosome Location	chr6:74563545-74563546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74561939..74564263-chr6:74564657..74566867,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1370436	0.92[CEU][hapmap]
rs1392916	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]
rs1837079	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2882695	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2917861	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs2917862	0.84[CEU][hapmap];0.87[CHB][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap]
rs2917864	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2917866	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2917867	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2917869	0.91[CEU][hapmap]
rs3005483	0.84[CEU][hapmap];0.87[CHB][hapmap]
rs3005486	0.87[CEU][hapmap]
rs3005488	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3005490	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3005491	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs3005493	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3005499	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3005500	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3005509	0.80[CEU][hapmap];0.87[CHB][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap]
rs3005538	0.80[CEU][hapmap];0.87[CHB][hapmap]
rs3012544	0.80[CEU][hapmap];0.87[CHB][hapmap]
rs3012549	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3012551	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012552	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012553	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012555	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012556	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012558	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012559	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3012564	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012565	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3012571	0.86[CHB][hapmap];0.81[TSI][hapmap]
rs4432951	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4615348	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6907830	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs9343085	0.80[ASN][1000 genomes]
rs9352034	0.80[ASN][1000 genomes]
rs9447054	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv526236	chr6:74563545-74662900	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74526400-74565000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:74534400-74580600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:74542400-74566800	Weak transcription	HMEC	breast
4	chr6:74552800-74567600	Weak transcription	NHDF-Ad	bronchial
5	chr6:74554200-74566800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:74555000-74565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:74555200-74566800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:74555400-74565000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:74555400-74574400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:74555600-74565000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:74555600-74569600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:74556000-74576000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr6:74556800-74574400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:74562000-74563800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:74562000-74564000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:74562000-74577800	Weak transcription	Aorta	Aorta
17	chr6:74562800-74566800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:74563200-74566800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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