Variant report
| Variant | rs9343189 |
|---|---|
| Chromosome Location | chr6:75220577-75220578 |
| allele | C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1041658 | 0.89[ASN][1000 genomes] |
| rs10434815 | 1.00[ASN][1000 genomes] |
| rs12662758 | 0.97[ASN][1000 genomes] |
| rs1318620 | 0.97[ASN][1000 genomes] |
| rs1334508 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1572228 | 0.82[ASN][1000 genomes] |
| rs2785671 | 0.89[ASN][1000 genomes] |
| rs4349776 | 1.00[ASN][1000 genomes] |
| rs498111 | 0.89[ASN][1000 genomes] |
| rs517712 | 0.87[ASN][1000 genomes] |
| rs527379 | 0.89[ASN][1000 genomes] |
| rs531195 | 0.89[ASN][1000 genomes] |
| rs575612 | 0.89[ASN][1000 genomes] |
| rs6904268 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6910123 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6912037 | 0.97[ASN][1000 genomes] |
| rs7756702 | 0.94[ASN][1000 genomes] |
| rs9341476 | 0.97[ASN][1000 genomes] |
| rs9341479 | 0.91[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9341482 | 1.00[ASN][1000 genomes] |
| rs9341483 | 1.00[ASN][1000 genomes] |
| rs9343176 | 0.97[ASN][1000 genomes] |
| rs9343184 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9350554 | 0.97[ASN][1000 genomes] |
| rs9360807 | 0.93[ASN][1000 genomes] |
| rs9360809 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9360810 | 1.00[ASN][1000 genomes] |
| rs9360811 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3337652 | chr6:75191281-75236324 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 2 | nsv520746 | chr6:75211546-75691814 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:75220400-75220800 | Enhancers | HSMMtube | muscle |
