Variant report

Variant	rs1572228
Chromosome Location	chr6:75229213-75229214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1041657	0.88[CEU][hapmap]
rs1041658	0.83[ASN][1000 genomes]
rs10434815	0.82[ASN][1000 genomes]
rs1167371	0.88[CEU][hapmap]
rs12662758	0.80[ASN][1000 genomes]
rs1318620	0.80[ASN][1000 genomes]
rs1334508	0.82[ASN][1000 genomes]
rs2785671	0.83[ASN][1000 genomes]
rs2785684	0.88[CEU][hapmap];0.91[TSI][hapmap]
rs4349776	0.82[ASN][1000 genomes]
rs494683	1.00[CEU][hapmap]
rs498111	0.83[ASN][1000 genomes]
rs517712	0.81[ASN][1000 genomes]
rs527379	0.83[ASN][1000 genomes]
rs531195	0.83[ASN][1000 genomes]
rs575612	0.83[ASN][1000 genomes]
rs6904268	0.82[ASN][1000 genomes]
rs6910123	0.82[ASN][1000 genomes]
rs6912037	0.80[ASN][1000 genomes]
rs7756702	0.84[ASN][1000 genomes]
rs9341476	0.80[ASN][1000 genomes]
rs9341482	0.82[ASN][1000 genomes]
rs9341483	0.82[ASN][1000 genomes]
rs9343176	0.80[ASN][1000 genomes]
rs9343184	0.82[ASN][1000 genomes]
rs9343189	0.82[ASN][1000 genomes]
rs9350554	0.80[ASN][1000 genomes]
rs9360809	0.82[ASN][1000 genomes]
rs9360810	0.82[ASN][1000 genomes]
rs9360811	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337652	chr6:75191281-75236324	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75228600-75229400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:75228600-75229600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75228800-75229400	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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