Variant report
| Variant | rs9344040 |
|---|---|
| Chromosome Location | chr6:81451994-81451995 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1158787 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12173961 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1319816 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1454468 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2123993 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2323039 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs28597091 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4607400 | 0.98[EUR][1000 genomes] |
| rs62424608 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6454182 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6454184 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6913090 | 0.97[EUR][1000 genomes] |
| rs72892161 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7382697 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7749684 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7758837 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9352858 | 0.98[EUR][1000 genomes] |
| rs9352866 | 0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9361653 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs946485 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531333 | chr6:81042427-81836484 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019670 | chr6:81086504-81569984 | ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv886315 | chr6:81352515-81946866 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886316 | chr6:81390313-81554464 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv886317 | chr6:81428336-81536597 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv886318 | chr6:81447367-81769538 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:81451800-81452800 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
