Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81475807..81477610-chr6:81479287..81482021,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1158787	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12173961	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1319816	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1454468	0.92[EUR][1000 genomes]
rs2123993	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2323039	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28597091	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4607400	0.93[EUR][1000 genomes]
rs62424608	0.92[EUR][1000 genomes]
rs6454182	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6454184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913090	0.95[EUR][1000 genomes]
rs72892161	0.92[EUR][1000 genomes]
rs7382697	0.92[EUR][1000 genomes]
rs7749684	0.89[EUR][1000 genomes]
rs7758837	0.92[EUR][1000 genomes]
rs9344040	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9352858	0.93[EUR][1000 genomes]
rs9361653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946485	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886316	chr6:81390313-81554464	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886317	chr6:81428336-81536597	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9352866	ME1	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81481200-81482200	Enhancers	Pancreatic Islets	Pancreatic Islet

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