Variant report

Variant	rs9345586
Chromosome Location	chr6:65714689-65714690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 160 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs11752311	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11756218	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11757845	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11758005	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11758096	0.90[AMR][1000 genomes]
rs11759933	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12175848	0.84[AMR][1000 genomes]
rs17688615	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17739511	0.84[AMR][1000 genomes]
rs2024834	0.84[AMR][1000 genomes]
rs2024835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2024836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144716	0.84[AMR][1000 genomes]
rs2224205	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2224206	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2349999	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28493571	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28546411	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28583858	0.93[AMR][1000 genomes]
rs28710139	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61310776	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875929	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875932	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875936	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875953	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875955	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875958	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875962	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875963	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875965	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875967	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875968	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875972	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875975	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875977	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875979	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72875987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72875988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72875996	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72875997	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72877814	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72877816	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72877817	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72877819	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72877827	0.81[EUR][1000 genomes]
rs72877831	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72877837	0.81[EUR][1000 genomes]
rs72877840	0.81[EUR][1000 genomes]
rs9342454	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9342455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9345571	0.84[AMR][1000 genomes]
rs9345573	0.84[AMR][1000 genomes]
rs9345574	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9345575	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9345576	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9345578	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9345582	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9345583	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9345584	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9345585	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9351475	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9351477	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9351478	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9351479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354194	0.84[AMR][1000 genomes]
rs9354195	0.84[AMR][1000 genomes]
rs9354196	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9354197	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9354199	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9354200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9354203	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9354207	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9354208	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9360100	0.84[AMR][1000 genomes]
rs9360102	0.84[AMR][1000 genomes]
rs9360103	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9360105	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9360106	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9360107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360109	0.93[AMR][1000 genomes]
rs9360110	0.87[AMR][1000 genomes]
rs9363299	0.84[AMR][1000 genomes]
rs9363301	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363302	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363303	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363304	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363307	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363308	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363309	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363310	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363311	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363312	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363313	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363314	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9363316	0.96[ASN][1000 genomes]
rs9363317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9363323	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9363325	0.81[EUR][1000 genomes]
rs9453127	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:58 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020411	chr6:65321029-65854790	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538276	chr6:65321029-65854790	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1024611	chr6:65379523-65736399	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1034253	chr6:65390865-65865124	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv538278	chr6:65390865-65865124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv949287	chr6:65422320-65828488	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv948458	chr6:65463110-65828488	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv933558	chr6:65524861-65760189	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1034043	chr6:65573463-65823028	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1034230	chr6:65579061-65887750	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv933464	chr6:65596504-65767718	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv933937	chr6:65596504-65926900	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv933776	chr6:65598694-65760189	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv1022556	chr6:65624150-65914258	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv934051	chr6:65625209-65926900	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv886008	chr6:65650698-65722525	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	nsv934217	chr6:65655722-65767718	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
18	nsv933140	chr6:65655722-65814323	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv886009	chr6:65698500-65918809	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv538282	chr6:65699165-65735252	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv1823254	chr6:65705075-65714719	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
22	nsv1018829	chr6:65706561-65877545	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	nsv1018528	chr6:65706561-65900388	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv1022419	chr6:65708779-65760190	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	nsv538283	chr6:65708779-65760190	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	esv3474059	chr6:65710868-65715817	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
27	esv3474060	chr6:65710932-65715783	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
28	esv5426	chr6:65710977-65715854	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
29	esv3474058	chr6:65710992-65715717	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
30	nsv499480	chr6:65711005-65715718	ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
31	esv3474061	chr6:65711006-65715718	Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
32	esv15718	chr6:65711019-65715055	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
33	esv1817899	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
34	esv1818339	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
35	esv1820671	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
36	esv1821262	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
37	esv1821818	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
38	esv1822744	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
39	esv1822996	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
40	esv1823393	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
41	esv1823561	chr6:65711096-65714719	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
42	nsv603409	chr6:65711096-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
43	esv1819834	chr6:65711412-65714719	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
44	nsv603413	chr6:65711412-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
45	nsv603418	chr6:65711425-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
46	nsv823711	chr6:65711436-65715011	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
47	nsv514364	chr6:65711635-65714871	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
48	esv1817889	chr6:65711755-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
49	esv1822757	chr6:65711755-65714719	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
50	esv1821550	chr6:65711755-65726738	ZNF genes & repeats Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65707000-65716000	Weak transcription	Pancreas	Pancrea
2	chr6:65712000-65715000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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