Variant report

Variant	rs9346260
Chromosome Location	chr6:62928918-62928919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1010258	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1610007	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2344799	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2345326	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4710671	0.85[AFR][1000 genomes]
rs4710672	0.80[AFR][1000 genomes]
rs9346133	0.82[ASN][1000 genomes]
rs9346303	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9360326	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9363992	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9364087	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017249	chr6:62906813-63317382	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020677	chr6:62911584-63309663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv603324	chr6:62925124-62934455	Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv603325	chr6:62925124-62934738	ZNF genes & repeats Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv603330	chr6:62926037-62934455	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv603339	chr6:62926139-62934455	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv603343	chr6:62926297-62934455	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv603344	chr6:62926297-62934738	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv1021518	chr6:62927880-62974776	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:62921600-62929600	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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