Variant report

Variant	rs9347491
Chromosome Location	chr6:161727183-161727184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161713190..161716483-chr6:161724342..161727800,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12191683	0.80[ASN][1000 genomes]
rs1407211	0.92[ASN][1000 genomes]
rs6455717	0.83[EUR][1000 genomes]
rs6455718	0.83[EUR][1000 genomes]
rs6933448	0.80[ASN][1000 genomes]
rs7772250	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9295146	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9295147	0.80[ASN][1000 genomes]
rs9355886	0.80[ASN][1000 genomes]
rs9355888	0.87[ASN][1000 genomes]
rs9365273	0.80[ASN][1000 genomes]
rs9456650	0.81[ASN][1000 genomes]
rs9458192	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv949397	chr6:161592100-161812932	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	esv2752091	chr6:161592100-161855785	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1029727	chr6:161607680-161814295	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1030623	chr6:161611170-161796985	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv538494	chr6:161611170-161796985	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv533149	chr6:161653240-161769727	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv869611	chr6:161690974-161817564	Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv1025168	chr6:161702621-161831885	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv886819	chr6:161712035-162520133	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv886820	chr6:161712880-162184932	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv3474361	chr6:161726018-161728095	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3474359	chr6:161726154-161728000	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv820100	chr6:161726158-161728227	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3474360	chr6:161726226-161727935	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv11242	chr6:161726247-161728479	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv823910	chr6:161726247-161728794	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv481639	chr6:161726293-161727876	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3474362	chr6:161726294-161727876	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv821549	chr6:161726693-161727904	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv15011	chr6:161726953-161727789	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv605042	chr6:161726980-161727519	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv605043	chr6:161726980-161727570	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv605044	chr6:161726980-161727622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv605045	chr6:161726980-161727674	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv605046	chr6:161726980-161727727	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv605047	chr6:161726980-161727792	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv605048	chr6:161726980-161727894	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv605049	chr6:161726980-161727945	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv605050	chr6:161727014-161727570	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv605051	chr6:161727014-161727622	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv605052	chr6:161727014-161727792	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv605053	chr6:161727014-161727894	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv605054	chr6:161727116-161727622	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv605055	chr6:161727116-161727894	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv605056	chr6:161727168-161727792	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv605057	chr6:161727183-161727792	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161722600-161727600	Weak transcription	K562	blood
2	chr6:161722600-161735800	Weak transcription	Right Atrium	heart
3	chr6:161725600-161730200	Weak transcription	HMEC	breast
4	chr6:161726800-161729000	Enhancers	Brain Hippocampus Middle	brain
5	chr6:161727000-161727200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr6:161727000-161727400	Enhancers	Brain Substantia Nigra	brain
7	chr6:161727000-161728400	Enhancers	Brain Cingulate Gyrus	brain

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