Variant report

Variant	rs9349973
Chromosome Location	chr6:15222515-15222516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15090118..15090992-chr6:15222224..15222852,2	MCF-7	breast:
2	chr6:15220208..15222554-chr6:15245175..15248225,3	K562	blood:
3	chr6:15088434..15092772-chr6:15219565..15225354,13	MCF-7	breast:
4	chr6:15159586..15160406-chr6:15221873..15222534,2	MCF-7	breast:
5	chr6:15218874..15225564-chr6:15243422..15249789,18	MCF-7	breast:
6	chr6:15036577..15037681-chr6:15221695..15222858,47	MCF-7	breast:
7	chr6:15221913..15222672-chr6:15251439..15252219,3	MCF-7	breast:
8	chr6:15159669..15160562-chr6:15221851..15222693,5	MCF-7	breast:
9	chr6:14732703..14735058-chr6:15220960..15223796,2	MCF-7	breast:
10	chr6:14742305..14744752-chr6:15222484..15225143,3	MCF-7	breast:
11	chr6:15221849..15222672-chr6:15251348..15252219,4	MCF-7	breast:
12	chr6:15036618..15037814-chr6:15222040..15222792,3	MCF-7	breast:
13	chr6:15159669..15160562-chr6:15221851..15222693,7	MCF-7	breast:
14	chr6:15221003..15223875-chr6:15224055..15226661,2	K562	blood:
15	chr6:15065755..15066391-chr6:15221786..15222792,3	MCF-7	breast:
16	chr6:15221787..15224123-chr6:15242600..15245881,4	MCF-7	breast:
17	chr6:15220573..15223155-chr6:15261429..15263583,2	MCF-7	breast:
18	chr6:15036541..15037680-chr6:15221576..15222858,87	MCF-7	breast:
19	chr6:15086580..15087543-chr6:15222018..15222752,2	MCF-7	breast:
20	chr6:15089626..15091000-chr6:15221614..15222784,26	MCF-7	breast:
21	chr6:15089777..15091000-chr6:15221713..15222784,34	MCF-7	breast:
22	chr6:15063403..15067702-chr6:15220647..15223786,6	MCF-7	breast:
23	chr6:15089965..15090818-chr6:15221895..15222789,4	MCF-7	breast:
24	chr6:15036654..15037849-chr6:15221676..15222733,18	MCF-7	breast:
25	chr6:15222014..15222653-chr6:15244886..15245658,2	MCF-7	breast:
26	chr6:15065722..15066223-chr6:15222053..15222565,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000235488	Chromatin interaction
ENSG00000234261	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13210761	0.83[ASN][1000 genomes]
rs7759899	0.87[ASN][1000 genomes]
rs7760174	0.92[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs9349970	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1027010	chr6:15201803-15425629	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15212000-15227600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:15219000-15223200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15219200-15223800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:15219200-15224000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:15219400-15224000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:15219400-15224200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:15220600-15223000	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:15220600-15223400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:15221200-15222600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:15221200-15223200	Weak transcription	Primary B cells from cord blood	blood
11	chr6:15221400-15223200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:15221800-15222600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:15221800-15222600	Enhancers	Fetal Heart	heart
14	chr6:15221800-15222600	Enhancers	Left Ventricle	heart
15	chr6:15221800-15222600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:15221800-15222600	Enhancers	K562	blood
17	chr6:15222000-15222600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:15222000-15222600	Enhancers	Liver	Liver
19	chr6:15222000-15222600	Enhancers	Colon Smooth Muscle	Colon
20	chr6:15222000-15222600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr6:15222000-15222600	Enhancers	Right Atrium	heart
22	chr6:15222000-15222800	Enhancers	HepG2	liver
23	chr6:15222200-15222600	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:15222200-15222600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr6:15222200-15222600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:15222200-15222600	Enhancers	Adipose Nuclei	Adipose
27	chr6:15222200-15222600	Enhancers	Fetal Kidney	kidney
28	chr6:15222200-15222600	Enhancers	Placenta	Placenta
29	chr6:15222200-15222600	Enhancers	Ovary	ovary
30	chr6:15222200-15222600	Enhancers	Right Ventricle	heart
31	chr6:15222200-15222600	Flanking Active TSS	A549	lung
32	chr6:15222200-15222800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:15222200-15222800	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr6:15222400-15227600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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