Variant report

Variant	rs13210761
Chromosome Location	chr6:15184877-15184878
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16876112	0.81[YRI][hapmap]
rs7759899	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7760174	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7763564	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9349970	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9349973	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs9370800	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9383029	0.94[CEU][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9383034	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9396561	0.94[CEU][hapmap]
rs9476759	0.89[YRI][hapmap]
rs9476768	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15183400-15185200	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr6:15184200-15185000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr6:15184200-15185000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:15184200-15185000	Enhancers	GM12878-XiMat	blood
5	chr6:15184200-15185200	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:15184200-15185200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:15184200-15185200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:15184200-15185200	Enhancers	Fetal Thymus	thymus
9	chr6:15184400-15185000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:15184400-15185000	Enhancers	Primary T cells from cord blood	blood
11	chr6:15184400-15185000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr6:15184400-15185000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr6:15184400-15185200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:15184600-15188400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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