Variant report
| Variant | rs9476759 |
|---|---|
| Chromosome Location | chr6:15158709-15158710 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:15156210..15158890-chr6:15211476..15214661,3 | K562 | blood: | |
| 2 | chr6:14918253..14920493-chr6:15156735..15158710,2 | MCF-7 | breast: | |
| 3 | chr6:15158330..15160167-chr6:15160268..15162625,2 | K562 | blood: | |
| 4 | chr6:15143787..15146280-chr6:15158034..15160190,2 | K562 | blood: | |
| 5 | chr6:15088965..15090791-chr6:15157951..15160766,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234261 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11968539 | 0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13194276 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16876112 | 0.88[YRI][hapmap] |
| rs16876121 | 0.93[ASN][1000 genomes] |
| rs1830498 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs35020077 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs55930114 | 0.85[ASN][1000 genomes] |
| rs73371668 | 0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73373422 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73373423 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73373435 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73373441 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73724749 | 0.87[ASN][1000 genomes] |
| rs73724750 | 0.87[ASN][1000 genomes] |
| rs9383029 | 0.85[YRI][hapmap] |
| rs9464751 | 0.85[ASN][1000 genomes] |
| rs9464752 | 0.89[ASN][1000 genomes] |
| rs9464755 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9476749 | 0.87[ASN][1000 genomes] |
| rs9476750 | 0.87[ASN][1000 genomes] |
| rs9476751 | 0.85[ASN][1000 genomes] |
| rs9476752 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs9476753 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs9476757 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9476762 | 0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830593 | chr6:15049636-15244190 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016007 | chr6:15099585-15159098 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2762580 | chr6:15105917-15159110 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:15158600-15160000 | Enhancers | K562 | blood |
