Variant report

Variant	rs73373422
Chromosome Location	chr6:15160594-15160595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15159244..15161840-chr6:15169740..15172475,3	K562	blood:
2	chr6:15159787..15162228-chr6:15245080..15247075,2	MCF-7	breast:
3	chr6:15088965..15090791-chr6:15157951..15160766,2	K562	blood:
4	chr6:15158330..15160167-chr6:15160268..15162625,2	K562	blood:

Variant related genes	Relation type
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11968539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13194276	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16876121	0.93[ASN][1000 genomes]
rs1830498	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28460493	0.89[AFR][1000 genomes]
rs55930114	0.85[ASN][1000 genomes]
rs6903057	0.80[AFR][1000 genomes]
rs6925982	0.80[AFR][1000 genomes]
rs6935098	0.80[AFR][1000 genomes]
rs73371668	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73371691	0.89[AFR][1000 genomes]
rs73373423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73373435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73373441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73373454	0.82[AFR][1000 genomes]
rs73724749	0.87[ASN][1000 genomes]
rs73724750	0.87[ASN][1000 genomes]
rs7742757	0.80[AFR][1000 genomes]
rs7771522	0.80[AFR][1000 genomes]
rs9464751	0.85[ASN][1000 genomes]
rs9464752	0.89[ASN][1000 genomes]
rs9464755	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9476749	0.87[ASN][1000 genomes]
rs9476750	0.87[ASN][1000 genomes]
rs9476751	0.85[ASN][1000 genomes]
rs9476752	0.85[ASN][1000 genomes]
rs9476753	0.89[ASN][1000 genomes]
rs9476757	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476759	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9476762	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9718146	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15160400-15162200	Enhancers	K562	blood

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