Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15163487..15166298-chr6:15243296..15245626,2	K562	blood:
2	chr6:15088400..15090087-chr6:15163313..15165658,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11968539	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13194276	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16876121	0.98[ASN][1000 genomes]
rs1830498	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55930114	0.81[ASN][1000 genomes]
rs73371668	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73373422	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73373423	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73373435	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73373441	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73724749	0.83[ASN][1000 genomes]
rs73724750	0.83[ASN][1000 genomes]
rs9464751	0.81[ASN][1000 genomes]
rs9464752	0.85[ASN][1000 genomes]
rs9464755	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9476749	0.83[ASN][1000 genomes]
rs9476750	0.83[ASN][1000 genomes]
rs9476751	0.81[ASN][1000 genomes]
rs9476752	0.81[ASN][1000 genomes]
rs9476753	0.85[ASN][1000 genomes]
rs9476757	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9476759	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15161800-15166200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:15162200-15166400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search: