Variant report

Variant	rs73724750
Chromosome Location	chr6:15148446-15148447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15133229..15135738-chr6:15147564..15149146,2	K562	blood:
2	chr6:15147856..15151805-chr6:15244004..15248641,4	MCF-7	breast:
3	chr6:15096022..15098594-chr6:15145992..15148961,2	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10949273	0.88[EUR][1000 genomes]
rs11968539	0.87[ASN][1000 genomes]
rs12524376	0.88[EUR][1000 genomes]
rs12524746	0.83[EUR][1000 genomes]
rs13194276	0.87[ASN][1000 genomes]
rs16876121	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1739087	0.88[EUR][1000 genomes]
rs1770339	0.88[EUR][1000 genomes]
rs1770340	0.88[EUR][1000 genomes]
rs1830498	0.96[ASN][1000 genomes]
rs2474110	0.88[EUR][1000 genomes]
rs2474111	0.88[EUR][1000 genomes]
rs2474112	0.88[EUR][1000 genomes]
rs2486915	0.88[EUR][1000 genomes]
rs2486916	0.88[EUR][1000 genomes]
rs2486917	0.88[EUR][1000 genomes]
rs2747489	0.83[EUR][1000 genomes]
rs2747492	0.88[EUR][1000 genomes]
rs2791609	0.83[EUR][1000 genomes]
rs2791610	0.83[EUR][1000 genomes]
rs2791623	0.88[EUR][1000 genomes]
rs2791624	0.88[EUR][1000 genomes]
rs2791625	0.88[EUR][1000 genomes]
rs55930114	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73371668	0.98[ASN][1000 genomes]
rs73373422	0.87[ASN][1000 genomes]
rs73373423	0.87[ASN][1000 genomes]
rs73373435	0.87[ASN][1000 genomes]
rs73373441	0.87[ASN][1000 genomes]
rs73724749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9464752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476742	0.88[EUR][1000 genomes]
rs9476749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476751	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476757	0.87[ASN][1000 genomes]
rs9476759	0.87[ASN][1000 genomes]
rs9476762	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15146400-15151000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr6:15146600-15150600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:15148000-15149600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:15148200-15148600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr6:15148200-15148600	Enhancers	K562	blood
6	chr6:15148200-15149200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:15148200-15149200	Enhancers	HSMM	muscle
8	chr6:15148200-15149400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:15148200-15149400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:15148200-15149400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:15148200-15149400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:15148200-15149400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:15148200-15149400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:15148200-15149400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:15148200-15149400	Enhancers	Esophagus	oesophagus
16	chr6:15148200-15149400	Enhancers	Fetal Brain Male	brain
17	chr6:15148200-15149400	Enhancers	Psoas Muscle	Psoas
18	chr6:15148200-15149400	Enhancers	NHEK	skin
19	chr6:15148200-15149400	Enhancers	Osteobl	bone
20	chr6:15148200-15149600	Enhancers	HMEC	breast
21	chr6:15148400-15148600	Enhancers	HepG2	liver
22	chr6:15148400-15149200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:15148400-15149200	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:15148400-15149400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:15148400-15149400	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr6:15148400-15150600	Weak transcription	Right Atrium	heart

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