Variant report

Variant	rs9476753
Chromosome Location	chr6:15151732-15151733
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCLAF1	chr6:15151358-15151813	GM12878	blood:	n/a	n/a
2	CUX1	chr6:15151494-15151738	GM12878	blood:	n/a	n/a
3	NFIC	chr6:15151344-15151906	GM12878	blood:	n/a	n/a
4	MTA3	chr6:15151291-15151909	GM12878	blood:	n/a	n/a
5	RUNX3	chr6:15151299-15151952	GM12878	blood:	n/a	n/a
6	FOXM1	chr6:15151321-15151902	GM12878	blood:	n/a	n/a
7	BCL11A	chr6:15151369-15151810	GM12878	blood:	n/a	n/a
8	SPI1	chr6:15151087-15152067	GM12878	blood:	n/a	n/a
9	IRF4	chr6:15151397-15151887	GM12878	blood:	n/a	n/a
10	EP300	chr6:15151401-15151828	GM12878	blood:	n/a	n/a
11	RFX5	chr6:15151448-15151757	GM12878	blood:	n/a	n/a
12	MEF2C	chr6:15151500-15151887	GM12878	blood:	n/a	n/a
13	RXRA	chr6:15151526-15151732	GM12878	blood:	n/a	chr6:15151600-15151614
14	SPI1	chr6:15151501-15151788	GM12878	blood:	n/a	n/a
15	REST	chr6:15151507-15151753	Hela-S3	cervix:	n/a	n/a
16	CHD2	chr6:15151451-15151750	GM12878	blood:	n/a	n/a
17	ATF2	chr6:15151311-15151869	GM12878	blood:	n/a	n/a
18	MEF2C	chr6:15151345-15151986	GM12878	blood:	n/a	chr6:15151443-15151464
19	MEF2A	chr6:15151279-15151912	GM12878	blood:	n/a	chr6:15151443-15151464
20	RUNX3	chr6:15151294-15151831	GM12878	blood:	n/a	n/a
21	MEF2A	chr6:15151333-15151926	GM12878	blood:	n/a	chr6:15151443-15151464
22	MAZ	chr6:15151438-15151798	GM12878	blood:	n/a	n/a
23	SP1	chr6:15151351-15151787	GM12878	blood:	n/a	n/a
24	EBF1	chr6:15151424-15151786	GM12878	blood:	n/a	n/a
25	RCOR1	chr6:15151450-15151785	GM12878	blood:	n/a	n/a
26	IRF4	chr6:15151355-15151882	GM12878	blood:	n/a	n/a
27	TBL1XR1	chr6:15151451-15151772	GM12878	blood:	n/a	n/a
28	EP300	chr6:15151467-15151845	GM12878	blood:	n/a	n/a
29	SMC3	chr6:15151434-15151758	GM12878	blood:	n/a	n/a
30	EBF1	chr6:15151418-15151746	GM12878	blood:	n/a	n/a
31	BHLHE40	chr6:15151478-15151810	GM12878	blood:	n/a	n/a
32	SPI1	chr6:15151364-15151890	GM12891	blood:	n/a	n/a
33	MXI1	chr6:15151439-15151783	GM12878	blood:	n/a	n/a
34	PAX5	chr6:15151378-15151784	GM12878	blood:	n/a	n/a
35	EP300	chr6:15151421-15151855	GM12878	blood:	n/a	n/a
36	SPI1	chr6:15151399-15151867	GM12878	blood:	n/a	n/a
37	SPI1	chr6:15151396-15151859	GM12891	blood:	n/a	n/a
38	NFIC	chr6:15151307-15151969	GM12878	blood:	n/a	n/a
39	BCLAF1	chr6:15151355-15151858	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:15106983..15108831-chr6:15151531..15154353,2	K562	blood:
2	chr6:15147856..15151805-chr6:15244004..15248641,4	MCF-7	breast:
3	chr6:15148839..15151214-chr6:15151716..15153395,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264687	TF binding region
ENSG00000008083	Chromatin interaction
ENSG00000271888	Chromatin interaction
ENSG00000264687	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10949273	0.88[EUR][1000 genomes]
rs11968539	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12524376	0.88[EUR][1000 genomes]
rs12524746	0.83[EUR][1000 genomes]
rs13194276	0.89[ASN][1000 genomes]
rs16876121	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1739087	0.88[EUR][1000 genomes]
rs1770339	0.88[EUR][1000 genomes]
rs1770340	0.88[EUR][1000 genomes]
rs1830498	0.98[ASN][1000 genomes]
rs2474110	0.88[EUR][1000 genomes]
rs2474111	0.88[EUR][1000 genomes]
rs2474112	0.88[EUR][1000 genomes]
rs2486914	1.00[CEU][hapmap]
rs2486915	0.88[EUR][1000 genomes]
rs2486916	0.88[EUR][1000 genomes]
rs2486917	0.88[EUR][1000 genomes]
rs2747489	0.83[EUR][1000 genomes]
rs2747492	0.88[EUR][1000 genomes]
rs2747507	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs2791609	0.83[EUR][1000 genomes]
rs2791610	0.83[EUR][1000 genomes]
rs2791623	0.88[EUR][1000 genomes]
rs2791624	0.88[EUR][1000 genomes]
rs2791625	0.88[EUR][1000 genomes]
rs55930114	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73371668	0.96[ASN][1000 genomes]
rs73373422	0.89[ASN][1000 genomes]
rs73373423	0.89[ASN][1000 genomes]
rs73373435	0.89[ASN][1000 genomes]
rs73373441	0.89[ASN][1000 genomes]
rs73724749	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73724750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9464751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9464752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9464754	1.00[YRI][hapmap]
rs9476742	0.88[EUR][1000 genomes]
rs9476749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476751	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476752	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476757	0.89[ASN][1000 genomes]
rs9476759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9476762	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15148600-15153000	Weak transcription	K562	blood
2	chr6:15149200-15153000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15150400-15152000	Enhancers	GM12878-XiMat	blood
4	chr6:15150400-15152600	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:15150600-15152600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:15150800-15152200	Enhancers	Primary B cells from cord blood	blood
7	chr6:15150800-15152200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:15151000-15152000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr6:15151400-15152000	Enhancers	Fetal Muscle Leg	muscle

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