Variant report

Variant	rs10949273
Chromosome Location	chr6:15134912-15134913
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15134521..15137153-chr6:15210415..15211932,2	K562	blood:
2	chr6:15130172..15131963-chr6:15134360..15137201,2	K562	blood:
3	chr6:15133229..15135738-chr6:15147564..15149146,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12524376	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12524746	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16876121	0.86[EUR][1000 genomes]
rs1739085	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1739086	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1739087	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770339	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1770340	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1980528	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474109	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2474110	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2474111	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2474112	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2486914	0.89[EUR][1000 genomes]
rs2486915	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2486916	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2486917	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2747489	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2747492	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2747494	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2747506	0.89[EUR][1000 genomes]
rs2747507	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2791609	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2791610	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2791623	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2791624	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2791625	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2994318	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35821948	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55930114	0.83[EUR][1000 genomes]
rs73724749	0.88[EUR][1000 genomes]
rs73724750	0.88[EUR][1000 genomes]
rs9464751	0.88[EUR][1000 genomes]
rs9464752	0.88[EUR][1000 genomes]
rs9476742	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9476749	0.88[EUR][1000 genomes]
rs9476750	0.88[EUR][1000 genomes]
rs9476751	0.83[EUR][1000 genomes]
rs9476752	0.88[EUR][1000 genomes]
rs9476753	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15130200-15136400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:15130400-15135400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:15130400-15136400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:15130600-15136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:15130800-15136600	Weak transcription	GM12878-XiMat	blood
6	chr6:15131800-15135000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:15132400-15135200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:15132600-15135800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:15133400-15135200	Weak transcription	K562	blood
10	chr6:15133600-15135400	Enhancers	HMEC	breast
11	chr6:15133600-15137400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:15133800-15135200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:15134000-15135000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:15134000-15135200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:15134000-15135600	Enhancers	NHEK	skin
16	chr6:15134200-15135200	Weak transcription	Monocytes-CD14+_RO01746	blood

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