Variant report

Variant	rs35821948
Chromosome Location	chr6:15100491-15100492
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15099407..15102397-chr6:15106486..15108344,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10949273	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12524376	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12524746	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1739087	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1770339	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1770340	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1980528	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2474109	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2474110	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474111	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474112	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486914	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2486915	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486916	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486917	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2747489	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2747492	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2747494	0.83[AMR][1000 genomes]
rs2747506	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2747507	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2791609	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2791610	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2791623	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2791624	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2791625	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2994318	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476742	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15098400-15103600	Weak transcription	K562	blood

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