Variant report

Variant	rs1980528
Chromosome Location	chr6:15097263-15097264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15095661..15097537-chr6:15210477..15212559,2	K562	blood:
2	chr6:15096156..15097696-chr6:15623820..15625697,2	K562	blood:
3	chr6:15096022..15098594-chr6:15145992..15148961,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10949273	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12524376	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12524746	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1739085	0.83[AMR][1000 genomes]
rs1739086	0.83[AMR][1000 genomes]
rs1739087	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1739091	0.84[AFR][1000 genomes]
rs1770339	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1770340	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474109	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2474110	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474111	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474112	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486914	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2486915	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486916	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486917	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2747489	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2747492	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2747494	0.87[AMR][1000 genomes]
rs2747506	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2747507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2791609	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2791610	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2791623	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2791624	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2791625	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2994318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35821948	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476742	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15087400-15117600	Weak transcription	Right Atrium	heart
2	chr6:15090400-15109000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:15093400-15097400	Weak transcription	Placenta	Placenta
4	chr6:15097000-15098200	Flanking Active TSS	K562	blood
5	chr6:15097200-15097800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:15097200-15097800	Enhancers	NHEK	skin

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