Variant report

Variant	rs2486914
Chromosome Location	chr6:15084919-15084920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15079900..15085737-chr6:15087961..15092346,8	MCF-7	breast:
2	chr6:15084562..15086829-chr6:15124067..15125929,2	K562	blood:
3	chr6:15084903..15086685-chr6:15210308..15212825,2	K562	blood:
4	chr6:15078226..15082089-chr6:15082411..15086924,5	K562	blood:
5	chr6:15074593..15076383-chr6:15083206..15084995,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234261	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10949273	0.89[EUR][1000 genomes]
rs12524376	0.89[EUR][1000 genomes]
rs12524746	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1739087	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1770339	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1770340	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1980528	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2474109	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2474110	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474111	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2474112	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486915	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486916	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2486917	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2747489	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2747492	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2747506	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2747507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2791609	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2791610	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2791623	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2791624	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2791625	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2994318	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35821948	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9476742	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9476752	1.00[CEU][hapmap]
rs9476753	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15077000-15090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:15078400-15086600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:15078400-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:15078800-15087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:15080000-15089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:15080200-15086600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:15080400-15086800	Weak transcription	Right Atrium	heart
8	chr6:15082000-15086800	Weak transcription	Stomach Mucosa	stomach
9	chr6:15082200-15086600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:15083200-15086800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:15083800-15086200	Enhancers	K562	blood
12	chr6:15083800-15088200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:15083800-15093000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:15084000-15086800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:15084200-15085400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:15084800-15085200	Weak transcription	Fetal Intestine Large	intestine

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