Variant report

Variant	rs55930114
Chromosome Location	chr6:15146408-15146409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15144340..15146667-chr6:15148737..15150328,2	K562	blood:
2	chr6:15096022..15098594-chr6:15145992..15148961,2	K562	blood:

Variant related genes	Relation type
ENSG00000264687	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10949273	0.83[EUR][1000 genomes]
rs11968539	0.85[ASN][1000 genomes]
rs12524376	0.83[EUR][1000 genomes]
rs13194276	0.85[ASN][1000 genomes]
rs16876121	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1739087	0.83[EUR][1000 genomes]
rs1770339	0.83[EUR][1000 genomes]
rs1770340	0.83[EUR][1000 genomes]
rs1830498	0.93[ASN][1000 genomes]
rs2474110	0.83[EUR][1000 genomes]
rs2474111	0.83[EUR][1000 genomes]
rs2474112	0.83[EUR][1000 genomes]
rs2486915	0.83[EUR][1000 genomes]
rs2486916	0.83[EUR][1000 genomes]
rs2486917	0.83[EUR][1000 genomes]
rs2747492	0.83[EUR][1000 genomes]
rs2791623	0.83[EUR][1000 genomes]
rs2791624	0.83[EUR][1000 genomes]
rs2791625	0.83[EUR][1000 genomes]
rs73371668	0.96[ASN][1000 genomes]
rs73373422	0.85[ASN][1000 genomes]
rs73373423	0.85[ASN][1000 genomes]
rs73373435	0.85[ASN][1000 genomes]
rs73373441	0.85[ASN][1000 genomes]
rs73724749	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73724750	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9464751	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9464752	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476742	0.83[EUR][1000 genomes]
rs9476749	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476750	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476751	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9476752	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9476753	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9476757	0.85[ASN][1000 genomes]
rs9476759	0.85[ASN][1000 genomes]
rs9476762	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15145400-15148400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:15145600-15146600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:15146400-15151000	Weak transcription	Monocytes-CD14+_RO01746	blood

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