Variant report
| Variant | rs1830498 |
|---|---|
| Chromosome Location | chr6:15153627-15153628 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:15106983..15108831-chr6:15151531..15154353,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11968539 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs13194276 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs16876121 | 0.85[ASN][1000 genomes] |
| rs28460493 | 0.95[AFR][1000 genomes] |
| rs55930114 | 0.93[ASN][1000 genomes] |
| rs73371668 | 0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73371691 | 0.95[AFR][1000 genomes] |
| rs73373422 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73373423 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73373435 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73373441 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73724749 | 0.96[ASN][1000 genomes] |
| rs73724750 | 0.96[ASN][1000 genomes] |
| rs9464751 | 0.93[ASN][1000 genomes] |
| rs9464752 | 0.98[ASN][1000 genomes] |
| rs9464755 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs9476749 | 0.96[ASN][1000 genomes] |
| rs9476750 | 0.96[ASN][1000 genomes] |
| rs9476751 | 0.93[ASN][1000 genomes] |
| rs9476752 | 0.93[ASN][1000 genomes] |
| rs9476753 | 0.98[ASN][1000 genomes] |
| rs9476757 | 0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9476759 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9476762 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9718146 | 0.94[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830593 | chr6:15049636-15244190 | Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016007 | chr6:15099585-15159098 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2762580 | chr6:15105917-15159110 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:15153000-15154000 | Enhancers | K562 | blood |
