Variant report

Variant	rs7742757
Chromosome Location	chr6:15171847-15171848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11968539	0.80[AFR][1000 genomes]
rs28460493	0.80[AFR][1000 genomes]
rs28490476	0.88[AFR][1000 genomes]
rs6903057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6935098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371653	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371691	0.80[AFR][1000 genomes]
rs73373408	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373422	0.80[AFR][1000 genomes]
rs73373423	0.80[AFR][1000 genomes]
rs73373435	0.80[AFR][1000 genomes]
rs73373441	0.80[AFR][1000 genomes]
rs7744625	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15170000-15172200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:15170000-15172200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:15170000-15172200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:15170000-15172200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:15170000-15172400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:15170200-15172200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:15170200-15172200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:15170200-15172200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:15170200-15172200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:15170200-15172200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:15170400-15172200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:15170400-15172200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:15170600-15172000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:15171400-15172200	Enhancers	Brain Germinal Matrix	brain
15	chr6:15171400-15177200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:15171600-15172000	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:15171800-15172000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:15171800-15172200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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