Variant report

Variant	rs7744625
Chromosome Location	chr6:15166973-15166974
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28490476	0.86[AFR][1000 genomes]
rs6903057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6925982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6935098	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73371653	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73373408	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742757	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7771522	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15166200-15167400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:15166400-15170200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:15166600-15170000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr6:15166800-15170000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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