Variant report

Variant	rs28490476
Chromosome Location	chr6:15151264-15151265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6903057	0.88[AFR][1000 genomes]
rs6925982	0.88[AFR][1000 genomes]
rs6935098	0.88[AFR][1000 genomes]
rs73371653	0.81[AFR][1000 genomes]
rs73373408	0.90[AFR][1000 genomes]
rs7742757	0.88[AFR][1000 genomes]
rs7744625	0.86[AFR][1000 genomes]
rs7771522	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016007	chr6:15099585-15159098	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2762580	chr6:15105917-15159110	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15148600-15153000	Weak transcription	K562	blood
2	chr6:15149200-15153000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:15149400-15151400	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:15150400-15152000	Enhancers	GM12878-XiMat	blood
5	chr6:15150400-15152600	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:15150600-15152600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:15150800-15152200	Enhancers	Primary B cells from cord blood	blood
8	chr6:15150800-15152200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:15151000-15152000	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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