Variant report

Variant	rs9476768
Chromosome Location	chr6:15173956-15173957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12527322	0.82[EUR][1000 genomes]
rs13210761	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2008075	0.81[AMR][1000 genomes]
rs28441171	0.86[AMR][1000 genomes]
rs67978363	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7759899	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7760174	0.94[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7763564	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296971	0.87[AMR][1000 genomes]
rs9349970	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9358051	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9370800	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9370801	0.82[AMR][1000 genomes]
rs9383029	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9383030	0.82[AMR][1000 genomes]
rs9383032	0.82[AMR][1000 genomes]
rs9383034	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9396561	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs9476764	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830593	chr6:15049636-15244190	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830594	chr6:15171158-15261296	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv819441	chr6:15173846-15179631	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15171400-15177200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:15172200-15175400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:15173600-15174000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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